Comprehensive analysis of TCP transcription factors and their expression during cotton () fiber early development
Author
Ma, Jun; Liu, Fang; Wang, Qinglian; Wang, Kunbo; Jones, Don C.; Zhang, Baohong
Abstract
TCP proteins are plant-specific transcription factors implicated to perform a variety of physiological functions during plant growth and development. In the current study, we performed for the first time the comprehensive analysis of TCP gene family in a diploid cotton species, Gossypium arboreum, including phylogenetic analysis, chromosome location, gene duplication status, gene structure and conserved motif analysis, as well as expression profiles in fiber at different developmental stages. Our results showed that G. arboreum contains 36 TCP genes, distributing across all of the thirteen chromosomes. GaTCPs within the same subclade of the phylogenetic tree shared similar exon/intron organization and motif composition. In addition, both segmental duplication and whole-genome duplication contributed significantly to the expansion of GaTCPs. Many these TCP transcription factor genes are specifically expressed in cotton fiber during different developmental stages, including cotton fiber initiation and early development. This suggests that TCP genes may play important roles in cotton fiber development.
Subject
Date
2016-02
Citation:
APA:
Ma, Jun, & Liu, Fang, & Wang, Qinglian, & Wang, Kunbo, & Jones, Don C., & Zhang, Baohong. (February 2016).
Comprehensive analysis of TCP transcription factors and their expression during cotton () fiber early development.
Scientific Reports,
6(),
1-
10. Retrieved from
http://hdl.handle.net/10342/5487
MLA:
Ma, Jun, and Liu, Fang, and Wang, Qinglian, and Wang, Kunbo, and Jones, Don C., and Zhang, Baohong.
"Comprehensive analysis of TCP transcription factors and their expression during cotton () fiber early development". Scientific Reports.
6:. (1-10),
February 2016.
December 08, 2023.
http://hdl.handle.net/10342/5487.
Chicago:
Ma, Jun and Liu, Fang and Wang, Qinglian and Wang, Kunbo and Jones, Don C. and Zhang, Baohong,
"Comprehensive analysis of TCP transcription factors and their expression during cotton () fiber early development," Scientific Reports 6, no.
(February 2016),
http://hdl.handle.net/10342/5487 (accessed
December 08, 2023).
AMA:
Ma, Jun, Liu, Fang, Wang, Qinglian, Wang, Kunbo, Jones, Don C., Zhang, Baohong.
Comprehensive analysis of TCP transcription factors and their expression during cotton () fiber early development. Scientific Reports.
February 2016;
6():
1-10.
http://hdl.handle.net/10342/5487. Accessed
December 08, 2023.
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