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    De Novo Transcriptome Assembly and Comparative Analysis Elucidate Complicated Mechanism Regulating Astragalus chrysochlorus Response to Selenium Stimuli

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    Author
    Çakır, Özgür; Turgut-Kara1, Neslihan; Arı, Şule; Zhang, Baohong
    Abstract
    Astragalus species are medicinal plants that are used in the world for years. Some Astragalus species are known for selenium accumulation and tolerance and one of them is Astragalus chrysochlorus, a secondary selenium accumulator. In this study, we employed Illumina deep sequencing technology for the first time to de novo assemble A. chrysochlorus transcriptome and identify the differentially expressed genes after selenate treatment. Totally, 59,656 unigenes were annotated with different databases and 53,960 unigenes were detected in NR database. Transcriptome in A. chrysochlorus is closer to Glycine max than other plant species with 43,1 percentage of similarity. Annotated unigenes were also used for gene ontology enrichment and pathway enrichment analysis. The most significant genes and pathways were ABC transporters, plant pathogen interaction, biosynthesis of secondary metabolites and carbohydrate metabolism. Our results will help to enlighten the selenium accumulation and tolerance mechanisms, respectively in plants
    URI
    http://hdl.handle.net/10342/8135
    Date
    2015
    Citation:
    APA:
    Çakır, Özgür, & Turgut-Kara1, Neslihan, & Arı, Şule, & Zhang, Baohong. (January 2015). De Novo Transcriptome Assembly and Comparative Analysis Elucidate Complicated Mechanism Regulating Astragalus chrysochlorus Response to Selenium Stimuli. PloS One, (10:10), p.. Retrieved from http://hdl.handle.net/10342/8135

    Display/Hide MLA, Chicago and APA citation formats.

    MLA:
    Çakır, Özgür, and Turgut-Kara1, Neslihan, and Arı, Şule, and Zhang, Baohong. "De Novo Transcriptome Assembly and Comparative Analysis Elucidate Complicated Mechanism Regulating Astragalus chrysochlorus Response to Selenium Stimuli". PloS One. 10:10. (.), January 2015. April 21, 2021. http://hdl.handle.net/10342/8135.
    Chicago:
    Çakır, Özgür and Turgut-Kara1, Neslihan and Arı, Şule and Zhang, Baohong, "De Novo Transcriptome Assembly and Comparative Analysis Elucidate Complicated Mechanism Regulating Astragalus chrysochlorus Response to Selenium Stimuli," PloS One 10, no. 10 (January 2015), http://hdl.handle.net/10342/8135 (accessed April 21, 2021).
    AMA:
    Çakır, Özgür, Turgut-Kara1, Neslihan, Arı, Şule, Zhang, Baohong. De Novo Transcriptome Assembly and Comparative Analysis Elucidate Complicated Mechanism Regulating Astragalus chrysochlorus Response to Selenium Stimuli. PloS One. January 2015; 10(10) . http://hdl.handle.net/10342/8135. Accessed April 21, 2021.
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